STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PLCXD3PI-PLC X domain-containing protein 3 (321 aa)    
Predicted Functional Partners:
ZNF385B
Zinc finger protein 385B isoform X1
   
  
 0.662
SERINC5
Serine incorporator 5
      
 0.608
ADD3
Gamma-adducin isoform X1
      
 0.546
WDR64
WD repeat-containing protein 64
      
 0.537
HPCAL4
Hippocalcin-like protein 4 isoform X1
   
  
 0.532
VSNL1
Visinin-like protein 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 23 Proteins, and 17% coverage of the annotated genomic feature by RNAseq alignments
   
  
 0.532
POGZ
The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred complete CDS: inserted 2 bases in 1 codon
      
 0.527
MTMR7
Myotubularin-related protein 7; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 7 Proteins, and 26% coverage of the annotated genomic feature by RNAseq alignments; Belongs to the protein-tyrosine phosphatase family. Non-receptor class myotubularin subfamily
   
  
 0.519
TMTC2
Transmembrane and TPR repeat-containing protein 2
      
 0.478
C7
Complement component C7
      
 0.469
Your Current Organism:
Pteropus alecto
NCBI taxonomy Id: 9402
Other names: P. alecto, Pteropus alecto, black flying fox
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