Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| rplI | rplM | Shewana3_0704 | Shewana3_0692 | LSU ribosomal protein L9P; Binds to the 23S rRNA. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.991 |
| rplI | rplS | Shewana3_0704 | Shewana3_3014 | LSU ribosomal protein L9P; Binds to the 23S rRNA. | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.989 |
| rplI | rplT | Shewana3_0704 | Shewana3_2046 | LSU ribosomal protein L9P; Binds to the 23S rRNA. | LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.992 |
| rplI | rpmI | Shewana3_0704 | Shewana3_2045 | LSU ribosomal protein L9P; Binds to the 23S rRNA. | PFAM: ribosomal protein L35; KEGG: son:SO2301 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.968 |
| rplI | rpsB | Shewana3_0704 | Shewana3_2815 | LSU ribosomal protein L9P; Binds to the 23S rRNA. | PFAM: ribosomal protein S2; KEGG: son:SO1629 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.993 |
| rplI | rpsD | Shewana3_0704 | Shewana3_0223 | LSU ribosomal protein L9P; Binds to the 23S rRNA. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.992 |
| rplI | rpsF | Shewana3_0704 | Shewana3_0701 | LSU ribosomal protein L9P; Binds to the 23S rRNA. | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. | 0.997 |
| rplI | rpsH | Shewana3_0704 | Shewana3_0213 | LSU ribosomal protein L9P; Binds to the 23S rRNA. | SSU ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.991 |
| rplI | rpsN | Shewana3_0704 | Shewana3_0212 | LSU ribosomal protein L9P; Binds to the 23S rRNA. | SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.988 |
| rplI | rpsR | Shewana3_0704 | Shewana3_0703 | LSU ribosomal protein L9P; Binds to the 23S rRNA. | SSU ribosomal protein S18P; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.997 |
| rplM | rplI | Shewana3_0692 | Shewana3_0704 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | LSU ribosomal protein L9P; Binds to the 23S rRNA. | 0.991 |
| rplM | rplS | Shewana3_0692 | Shewana3_3014 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.993 |
| rplM | rplT | Shewana3_0692 | Shewana3_2046 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.996 |
| rplM | rpmI | Shewana3_0692 | Shewana3_2045 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | PFAM: ribosomal protein L35; KEGG: son:SO2301 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.990 |
| rplM | rpsB | Shewana3_0692 | Shewana3_2815 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | PFAM: ribosomal protein S2; KEGG: son:SO1629 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.994 |
| rplM | rpsD | Shewana3_0692 | Shewana3_0223 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.995 |
| rplM | rpsF | Shewana3_0692 | Shewana3_0701 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. | 0.991 |
| rplM | rpsH | Shewana3_0692 | Shewana3_0213 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | SSU ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.995 |
| rplM | rpsN | Shewana3_0692 | Shewana3_0212 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.993 |
| rplM | rpsR | Shewana3_0692 | Shewana3_0703 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | SSU ribosomal protein S18P; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.993 |
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