STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK48305.1PFAM: inner-membrane translocator; KEGG: sde:Sde_0768 conserved hypothetical ABC transporter permease protein YtfT. (405 aa)    
Predicted Functional Partners:
ABK48304.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sde:Sde_0767 putative sugar uptake ABC transporter ATP-binding protein.
 0.998
ABK48303.1
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sde:Sde_0766 putative LacI-type transcriptional regulator.
 0.995
ABK48306.1
PFAM: inner-membrane translocator; KEGG: sde:Sde_0769 helix-turn-helix, AraC type; Belongs to the binding-protein-dependent transport system permease family.
 
  
 
0.982
ABK47115.1
KEGG: son:SO3714 sugar-binding protein, putative.
 
 
 0.778
ABK48307.1
PFAM: glycoside hydrolase, family 43; KEGG: bha:BH1867 hypothetical protein; Belongs to the glycosyl hydrolase 43 family.
       0.773
ABK46592.1
KEGG: ppu:PP2372 periplasmic sugar-binding protein, putative.
 
 
 0.656
ABK46721.1
Putative PAS/PAC sensor protein; KEGG: son:SO4002 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: extracellular solute-binding protein, family 3; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
 
 0.607
ABK48302.1
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
   
 0.600
ABK47287.1
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: son:SO1229 periplasmic protein TorT.
  
 
 0.584
ABK48308.1
PFAM: glycoside hydrolase, family 43; KEGG: cac:CAC1529 beta-xylosidase, family 43 glycosyl hydrolase; Belongs to the glycosyl hydrolase 43 family.
       0.578
Your Current Organism:
Shewanella sp. ANA3
NCBI taxonomy Id: 94122
Other names: S. sp. ANA-3, Shewanella sp. ANA-3, Shewanella sp. arsenana, Shewanella trabarsenatis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.