STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK48490.1PFAM: Rhodanese domain protein; KEGG: son:SO2290 rhodanese domain protein; Belongs to the UPF0176 family. (330 aa)    
Predicted Functional Partners:
ABK47037.1
Ribosomal large subunit pseudouridine synthase A; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
      0.805
ABK48491.1
PFAM: Glutathione S-transferase, N-terminal domain protein; Glutathione S-transferase, C-terminal domain protein; KEGG: son:SO2288 glutathione-S-transferase domain protein.
 
     0.679
ABK49590.1
Methyl-accepting chemotaxis sensory transducer; PFAM: peptidase S45, penicillin amidase; KEGG: son:SO0918 aculeacin A acylase.
     
 0.471
ABK50229.1
PFAM: sulfatase; KEGG: son:SO4628 sulfatase.
     
 0.455
ABK50315.1
PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: son:SO4680 hypothetical protein.
      
 0.450
ABK47664.1
PFAM: pseudouridine synthase; KEGG: hch:HCH_04661 pseudouridylate synthases, 23S RNA-specific.
      0.406
Your Current Organism:
Shewanella sp. ANA3
NCBI taxonomy Id: 94122
Other names: S. sp. ANA-3, Shewanella sp. ANA-3, Shewanella sp. arsenana, Shewanella trabarsenatis
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