STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK48655.1PFAM: 37kDa nucleoid-associated protein; KEGG: son:SO2177 hypothetical protein. (342 aa)    
Predicted Functional Partners:
ABK48656.1
PFAM: protein of unknown function DUF1414; KEGG: son:SO2176 hypothetical protein; Belongs to the UPF0352 family.
 
   
 0.814
ABK48657.1
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; PFAM: sulfatase; KEGG: son:SO2175 hypothetical protein.
 
   
 0.811
seqA
seqA protein; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated.
  
    0.639
rlmM
Conserved hypothetical protein; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily.
  
    0.637
yihI
Protein of unknown function DUF414; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family.
  
     0.605
ABK47418.1
PFAM: protein of unknown function DUF469; KEGG: son:SO3366 hypothetical protein.
  
     0.591
ABK47787.1
PFAM: protein of unknown function DUF412; KEGG: son:SO2914 hypothetical protein.
  
     0.571
ABK48790.1
PFAM: protein of unknown function DUF177; KEGG: son:SO2781 hypothetical protein.
  
     0.548
ABK49056.1
PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1614 acetyltransferase, GNAT family.
  
     0.533
ABK47338.1
Hypothetical protein; KEGG: pha:PSHAa1851 universal stress protein.
  
     0.528
Your Current Organism:
Shewanella sp. ANA3
NCBI taxonomy Id: 94122
Other names: S. sp. ANA-3, Shewanella sp. ANA-3, Shewanella sp. arsenana, Shewanella trabarsenatis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.