Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK46380.1 | ABK49557.1 | Shewana3_0136 | Shewana3_3333 | PFAM: Excinuclease ABC, C subunit domain protein; KEGG: son:SO0145 hypothetical URI domain endonuclease. | Methyltransferase small; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). | 0.492 |
ABK46380.1 | rsmI | Shewana3_0136 | Shewana3_3879 | PFAM: Excinuclease ABC, C subunit domain protein; KEGG: son:SO0145 hypothetical URI domain endonuclease. | Protein of unknown function UPF0011; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.527 |
ABK48000.1 | ABK49557.1 | Shewana3_1767 | Shewana3_3333 | TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: son:SO2612 DNA polymerase III, delta prime subunit. | Methyltransferase small; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). | 0.406 |
ABK49556.1 | ABK49557.1 | Shewana3_3332 | Shewana3_3333 | Branched-chain amino acid transport system II carrier protein; Component of the transport system for branched-chain amino acids. | Methyltransferase small; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). | 0.448 |
ABK49557.1 | ABK46380.1 | Shewana3_3333 | Shewana3_0136 | Methyltransferase small; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). | PFAM: Excinuclease ABC, C subunit domain protein; KEGG: son:SO0145 hypothetical URI domain endonuclease. | 0.492 |
ABK49557.1 | ABK48000.1 | Shewana3_3333 | Shewana3_1767 | Methyltransferase small; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). | TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: son:SO2612 DNA polymerase III, delta prime subunit. | 0.406 |
ABK49557.1 | ABK49556.1 | Shewana3_3333 | Shewana3_3332 | Methyltransferase small; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). | Branched-chain amino acid transport system II carrier protein; Component of the transport system for branched-chain amino acids. | 0.448 |
ABK49557.1 | rsmI | Shewana3_3333 | Shewana3_3879 | Methyltransferase small; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). | Protein of unknown function UPF0011; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.500 |
ABK49557.1 | slyX | Shewana3_3333 | Shewana3_0901 | Methyltransferase small; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). | PFAM: SlyX family protein; KEGG: son:SO1063 SlyX protein; Belongs to the SlyX family. | 0.457 |
rsmI | ABK46380.1 | Shewana3_3879 | Shewana3_0136 | Protein of unknown function UPF0011; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | PFAM: Excinuclease ABC, C subunit domain protein; KEGG: son:SO0145 hypothetical URI domain endonuclease. | 0.527 |
rsmI | ABK49557.1 | Shewana3_3879 | Shewana3_3333 | Protein of unknown function UPF0011; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | Methyltransferase small; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). | 0.500 |
slyX | ABK49557.1 | Shewana3_0901 | Shewana3_3333 | PFAM: SlyX family protein; KEGG: son:SO1063 SlyX protein; Belongs to the SlyX family. | Methyltransferase small; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). | 0.457 |