STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2Z6QQF7Uncharacterized protein. (471 aa)    
Predicted Functional Partners:
A0A2Z6R5Y5
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...]
    
 
 0.798
A0A2Z6QTQ7
Uncharacterized protein.
    
 
 0.786
A0A2Z6RSY0
HIT domain-containing protein.
    
 
 0.786
A0A2Z6S3Z5
Ku domain-containing protein.
     
 0.691
A0A2Z6RUG3
Ku domain-containing protein.
    
 0.677
A0A2Z6RJ31
ERCC4 domain-containing protein.
   
 
 0.649
A0A2Z6RHX6
Uncharacterized protein.
    
 
 0.614
A0A2Z6S1D1
ERCC4 domain-containing protein.
   
 
 0.594
A0A2Z6R8B0
DRMBL domain-containing protein.
     
 0.552
A0A2Z6QFA0
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
     
 0.531
Your Current Organism:
Rhizophagus clarus
NCBI taxonomy Id: 94130
Other names: Glomus clarum, R. clarus, Rhizoglomus clarum, Rhizophagus clarus (T.H. Nicolson & N.C. Schenck) C. Walker & A. Schuessler 2010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.