STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2Z6RRU1TAFII55_N domain-containing protein. (543 aa)    
Predicted Functional Partners:
A0A2Z6Q199
Uncharacterized protein.
    
 0.999
A0A2Z6QIS6
Uncharacterized protein.
    
 0.999
A0A2Z6QP80
Uncharacterized protein.
    
 0.999
A0A2Z6R4P9
Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]
    
 0.999
A0A2Z6RDJ3
TAF6_C domain-containing protein.
    
 0.999
A0A2Z6RMC0
Bromo domain-containing protein.
    
 0.999
A0A2Z6S9C8
TFIID_20kDa domain-containing protein.
    
 0.999
A0A2Z6SLU9
TAF4 domain-containing protein.
    
 0.999
A0A2Z6SQT6
Peptidase_M1 domain-containing protein.
    
 0.999
A0A2Z6R771
TAFII28 domain-containing protein.
    
 0.998
Your Current Organism:
Rhizophagus clarus
NCBI taxonomy Id: 94130
Other names: Glomus clarum, R. clarus, Rhizoglomus clarum, Rhizophagus clarus (T.H. Nicolson & N.C. Schenck) C. Walker & A. Schuessler 2010
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