STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2Z6SNS3Reverse transcriptase domain-containing protein. (449 aa)    
Predicted Functional Partners:
A0A2Z6SP38
Integrase catalytic domain-containing protein.
 
     0.895
A0A2Z6RUA0
Integrase catalytic domain-containing protein.
 
     0.789
A0A2Z6RUP9
Integrase catalytic domain-containing protein.
 
     0.729
A0A2Z6R0W6
Integrase catalytic domain-containing protein.
 
     0.679
A0A2Z6S1X8
Integrase catalytic domain-containing protein.
 
     0.613
A0A2Z6Q1A7
Integrase catalytic domain-containing protein.
 
     0.612
A0A2Z6RJW8
Integrase catalytic domain-containing protein.
 
     0.496
A0A2Z6S4R2
Integrase catalytic domain-containing protein.
 
     0.464
A0A2Z6SHM4
RPA_C domain-containing protein.
    
  0.456
A0A2Z6Q4F3
Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.
    
  0.432
Your Current Organism:
Rhizophagus clarus
NCBI taxonomy Id: 94130
Other names: Glomus clarum, R. clarus, Rhizoglomus clarum, Rhizophagus clarus (T.H. Nicolson & N.C. Schenck) C. Walker & A. Schuessler 2010
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