STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbp1bPenicillin-binding protein 1b. (785 aa)    
Predicted Functional Partners:
pbp2X
Penicillin-binding protein 2x.
 
 
 0.975
pbp2b
Penicillin-binding protein 2b.
 
 
 0.973
ponA
Penicillin-binding protein 1a.
  
  
0.931
pbp2a
Penicillin-binding protein 2a.
  
  
0.929
dacA
D-alanyl-D-alanine carboxypeptidase; Protein synonym:DD-peptidase; Belongs to the peptidase S11 family.
  
 
 0.922
TEH_15410
Putative D-alanyl-D-alanine carboxypeptidase; Protein synonym:DD-peptidase.
     
 0.908
TEH_18540
Hypothetical protein.
 
     0.766
gpsB
Hypothetical protein; Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation.
   
 
 0.732
ftsW
Cell division protein FtsW; Belongs to the SEDS family.
 
 
 
 0.729
rodA
Cell division protein RodA; Protein synonym:rod shape-determining protein; Belongs to the SEDS family.
 
 
 
 0.726
Your Current Organism:
Tetragenococcus halophilus
NCBI taxonomy Id: 945021
Other names: T. halophilus NBRC 12172, Tetragenococcus halophilus NBRC 12172, Tetragenococcus halophilus str. NBRC 12172, Tetragenococcus halophilus strain NBRC 12172
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.