STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5A_00275COG1538 Outer membrane protein. (383 aa)    
Predicted Functional Partners:
W5A_00270
COG0845 Membrane-fusion protein.
 
   0.964
W5A_00260
ABC transporter ATPase; COG1131 ABC-type multidrug transport system, ATPase component.
 
     0.912
W5A_00250
COG0842 ABC-type multidrug transport system, permease component.
 
     0.910
W5A_00245
ABC transporter permease; COG0842 ABC-type multidrug transport system, permease component.
 
     0.909
W5A_00280
COG1309 Transcriptional regulator.
 
     0.905
W5A_00255
ABC transporter ATPase; COG1131 ABC-type multidrug transport system, ATPase component.
 
     0.898
W5A_08167
HlyD family secretion protein; COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
   
  0.889
W5A_03409
Efflux transporter, rnd family, mfp subunit; COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.727
W5A_04379
RND family efflux transporter MFP subunit; COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
   
  0.674
W5A_00265
Hypothetical protein.
       0.620
Your Current Organism:
Imtechella halotolerans
NCBI taxonomy Id: 946077
Other names: Flavobacterium sp. K1, I. halotolerans K1, Imtechella halotolerans K1, Imtechella halotolerans str. K1, Imtechella halotolerans strain K1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.