STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpet1493Putative lipoprotein. (146 aa)    
Predicted Functional Partners:
Bpet1490
Conserved hypothetical protein; Topoisomerase IA.
 
     0.948
Bpet1491
Putative secreted protein.
 
     0.948
Bpet1492
Putative exported protein.
 
     0.948
Bpetpseudo_04
Pseudogene.
 
     0.948
CAP41833.1
Pseudogene.
 
     0.895
Bpet1077
Conserved hypothetical protein.
 
     0.782
Bpet1078
Hypothetical protein; Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid.
 
     0.782
Bpet1079
Putative exported protein.
 
     0.782
Bpet1358
Conserved hypothetical protein.
 
     0.782
Bpet1359
Conserved hypothetical protein.
 
     0.782
Your Current Organism:
Bordetella petrii
NCBI taxonomy Id: 94624
Other names: B. petrii, Bordetella petrii von Wintzingerode et al. 2001, CCUG 43448, DSM 12804, strain Se-1111R
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.