STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpet1503Conserved hypothetical protein; Predicted ATPase with chaperone activity. (465 aa)    
Predicted Functional Partners:
Bpet1502
Conserved hypothetical protein.
 
     0.946
Bpet1505
Conserved hypothetical protein.
 
     0.939
Bpet1081
Conserved hypothetical protein.
 
 
   0.801
Bpet1362
Conserved hypothetical protein.
 
 
   0.801
Bpet4265
Conserved hypothetical protein.
 
 
   0.801
Bpetpseudo_04
Pseudogene.
 
 
   0.801
CAP41833.1
Pseudogene.
 
 
   0.801
Bpet1092
Putative helicase.
 
  
 0.788
Bpet1382
Putative helicase.
 
  
 0.788
Bpet1509
Putative helicase.
 
  
 0.788
Your Current Organism:
Bordetella petrii
NCBI taxonomy Id: 94624
Other names: B. petrii, Bordetella petrii von Wintzingerode et al. 2001, CCUG 43448, DSM 12804, strain Se-1111R
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