Bpet2450 protein (Bordetella petrii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Bpet2450

Uncharacterized protein conserved in bacteria. (574 aa)

Predicted Functional Partners:

Bpet2459

0.975

Bpet2451

0.967

Bpet2449

0.965

Bpet2453

0.962

Bpet2460

0.958

Bpet2452

0.949

Bpet2458

0.946

Bpet4103

0.944

Bpet2448

0.938

Bpet2447

0.937

Your Current Organism:

Bordetella petrii

NCBI taxonomy Id: 94624
Other names: B. petrii, Bordetella petrii von Wintzingerode et al. 2001, CCUG 43448, DSM 12804, strain Se-1111R

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Bpet2447	Bpet2448	Uncharacterized protein conserved in bacteria.	Conserved hypothetical protein; Hemolysin-coregulated protein (uncharacterized).	0.980
Bpet2447	Bpet2449	Uncharacterized protein conserved in bacteria.	Uncharacterized protein conserved in bacteria.	0.919
Bpet2447	Bpet2450	Uncharacterized protein conserved in bacteria.	Uncharacterized protein conserved in bacteria.	0.937
Bpet2447	Bpet2451	Uncharacterized protein conserved in bacteria.	Uncharacterized protein conserved in bacteria.	0.922
Bpet2447	Bpet2452	Uncharacterized protein conserved in bacteria.	Probable ClpA/B-type protease; Belongs to the ClpA/ClpB family.	0.921
Bpet2447	Bpet2453	Uncharacterized protein conserved in bacteria.	Uncharacterized protein conserved in bacteria.	0.918
Bpet2447	Bpet2458	Uncharacterized protein conserved in bacteria.	Putative lipoprotein.	0.900
Bpet2447	Bpet2459	Uncharacterized protein conserved in bacteria.	Uncharacterized protein conserved in bacteria.	0.913
Bpet2447	Bpet2460	Uncharacterized protein conserved in bacteria.	Uncharacterized protein conserved in bacteria.	0.959
Bpet2447	Bpet4103	Uncharacterized protein conserved in bacteria.	OmpA-family protein.	0.985
Bpet2448	Bpet2447	Conserved hypothetical protein; Hemolysin-coregulated protein (uncharacterized).	Uncharacterized protein conserved in bacteria.	0.980
Bpet2448	Bpet2449	Conserved hypothetical protein; Hemolysin-coregulated protein (uncharacterized).	Uncharacterized protein conserved in bacteria.	0.943
Bpet2448	Bpet2450	Conserved hypothetical protein; Hemolysin-coregulated protein (uncharacterized).	Uncharacterized protein conserved in bacteria.	0.938
Bpet2448	Bpet2451	Conserved hypothetical protein; Hemolysin-coregulated protein (uncharacterized).	Uncharacterized protein conserved in bacteria.	0.940
Bpet2448	Bpet2452	Conserved hypothetical protein; Hemolysin-coregulated protein (uncharacterized).	Probable ClpA/B-type protease; Belongs to the ClpA/ClpB family.	0.829
Bpet2448	Bpet2453	Conserved hypothetical protein; Hemolysin-coregulated protein (uncharacterized).	Uncharacterized protein conserved in bacteria.	0.938
Bpet2448	Bpet2458	Conserved hypothetical protein; Hemolysin-coregulated protein (uncharacterized).	Putative lipoprotein.	0.924
Bpet2448	Bpet2459	Conserved hypothetical protein; Hemolysin-coregulated protein (uncharacterized).	Uncharacterized protein conserved in bacteria.	0.918
Bpet2448	Bpet2460	Conserved hypothetical protein; Hemolysin-coregulated protein (uncharacterized).	Uncharacterized protein conserved in bacteria.	0.928
Bpet2448	Bpet4103	Conserved hypothetical protein; Hemolysin-coregulated protein (uncharacterized).	OmpA-family protein.	0.627