STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpet4281Putative lipoprotein. (192 aa)    
Predicted Functional Partners:
Bpet4274
Putative membrane protein.
 
     0.942
Bpet4276
Hypothetical protein.
 
     0.942
Bpet4277
Conserved exported protein.
 
     0.942
Bpet4279
Conserved protein, putatively exported.
 
     0.942
Bpet4275
Hypothetical protein; ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components.
 
     0.941
Bpet4278
Conserved exported protein.
 
     0.938
Bpet4273
Putative membrane protein.
 
     0.889
Bpet4267
Putative exported protein.
 
     0.880
Bpet4268
Putative secreted protein.
 
     0.880
Bpet4266
Putative lipoprotein.
 
     0.879
Your Current Organism:
Bordetella petrii
NCBI taxonomy Id: 94624
Other names: B. petrii, Bordetella petrii von Wintzingerode et al. 2001, CCUG 43448, DSM 12804, strain Se-1111R
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