STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trbC2Conjugal transfer protein TrbC. (117 aa)    
Predicted Functional Partners:
trbD2
Conjugal transfer protein TrbD.
 
   
 0.954
trbE2
Conjugal transfer protein TrbE.
 
 
 
 0.954
traG2
Conjugal transfer protein TraG.
 
   
 0.951
trbJ2
Conjugal transfer protein TrbJ.
 
   
 0.950
Bpet4616
Putative DNA-binding protein.
 
     0.949
trbB2
Conjugal transfer protein TrbB.
 
   
 0.922
trbL2
Conjugal transfer protein TrbL.
 
   
 0.921
trbF2
Conjugal transfer protein TrbF.
 
   
 0.921
trbG2
Conjugal transfer protein TrbG.
 
   
 0.868
trbI2
Conjugal transfer protein TrbI.
 
   
 0.868
Your Current Organism:
Bordetella petrii
NCBI taxonomy Id: 94624
Other names: B. petrii, Bordetella petrii von Wintzingerode et al. 2001, CCUG 43448, DSM 12804, strain Se-1111R
Server load: medium (80%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.