STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpet4690Conserved hypothetical protein; Predicted O-methyltransferase. (221 aa)    
Predicted Functional Partners:
Bpet4689
Transcriptional regulator, TetR-family.
 
   
 0.891
Bpet3094
Conserved hypothetical protein; Collagenase and related proteases.
  
  
 0.721
Bpet3095
Putative protease.
  
  
 0.721
wcbR
Putative polyketide synthase.
 
 
 0.627
Bpet4136
Hypothetical protein.
 
     0.531
Bpet3005
Hypothetical protein predicted by Glimmer/Critica.
 
     0.525
Bpet3352
Probable glutathione S-transferase.
 
   0.429
Bpet1810
Conserved hypothetical protein; Belongs to the methyltransferase superfamily.
  
  
 0.406
Your Current Organism:
Bordetella petrii
NCBI taxonomy Id: 94624
Other names: B. petrii, Bordetella petrii von Wintzingerode et al. 2001, CCUG 43448, DSM 12804, strain Se-1111R
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.