STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BESB_026870MINDY_DUB domain-containing protein. (1420 aa)    
Predicted Functional Partners:
BESB_020310
Ribosomal-ubiquitin protein RPL40.
   
   0.841
BESB_006850
Ribosomal-ubiquitin protein RPS27A.
    
   0.809
BESB_059360
SET domain-containing protein.
    
 0.782
BESB_044180
Putative histone lysine methyltransferase, SET.
    
 0.782
BESB_053180
NAD dependent epimerase/dehydratase family protein.
     
 0.764
BESB_065600
AP2 domain transcription factor AP2VIIa-5.
     
 0.607
BESB_048390
Uncharacterized protein.
     
 0.607
BESB_012310
Ubiquitin family protein.
    
   0.603
BESB_032900
Sde2_N_Ubi domain-containing protein.
    
   0.603
BESB_040370
Putative polyubiquitin UbC.
    
   0.603
Your Current Organism:
Besnoitia besnoiti
NCBI taxonomy Id: 94643
Other names: B. besnoiti
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.