STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RvY_07564-1Uncharacterized protein. (503 aa)    
Predicted Functional Partners:
RvY_09864-1
Uncharacterized protein.
  
 0.876
RvY_18960-1
Aspartate aminotransferase.
  
 
 0.750
RvY_15021-1
Aspartate aminotransferase.
  
 
 0.743
RvY_06514-1
Aminotran_1_2 domain-containing protein.
   
 
 0.728
RvY_05708-1
Uncharacterized protein.
    
 0.714
RvY_08233-1
Histidine ammonia-lyase; Belongs to the PAL/histidase family.
   
 
 0.707
RvY_09184-1
BH4_AAA_HYDROXYL_2 domain-containing protein.
  
 
0.678
RvY_03451-1
C-type lectin domain-containing protein.
  
 
 0.652
RvY_10182-1
Tryptophan 2,3-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.
  
 
 0.652
RvY_13111-1
DHFR domain-containing protein; Belongs to the dihydrofolate reductase family.
     
 0.645
Your Current Organism:
Ramazzottius varieornatus
NCBI taxonomy Id: 947166
Other names: R. varieornatus
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