RvY_08734-1 protein (Ramazzottius varieornatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RvY_08734-1

SF4 helicase domain-containing protein. (722 aa)

Predicted Functional Partners:

RvY_13617-1

0.872

RvY_01215

0.772

RvY_01215-2

0.772

RvY_05862-1

0.772

RvY_07050-1

0.637

RvY_09535-1

0.554

RvY_16566-1

0.554

RvY_02171-1

0.552

RvY_01157-1

0.551

RvY_09572-1

0.514

Your Current Organism:

Ramazzottius varieornatus

NCBI taxonomy Id: 947166
Other names: R. varieornatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RvY_01157-1	RvY_07050-1	A0A1D1ULD9	A0A1D1V108	ETS domain-containing protein.	Uncharacterized protein.	0.551
RvY_01157-1	RvY_08734-1	A0A1D1ULD9	A0A1D1VEX5	ETS domain-containing protein.	SF4 helicase domain-containing protein.	0.551
RvY_01157-1	RvY_09572-1	A0A1D1ULD9	A0A1D1VBZ8	ETS domain-containing protein.	Uncharacterized protein.	0.551
RvY_01215	RvY_07050-1	A0A1D1UGE8	A0A1D1V108	Uncharacterized protein.	Uncharacterized protein.	0.456
RvY_01215	RvY_08734-1	A0A1D1UGE8	A0A1D1VEX5	Uncharacterized protein.	SF4 helicase domain-containing protein.	0.772
RvY_01215	RvY_09572-1	A0A1D1UGE8	A0A1D1VBZ8	Uncharacterized protein.	Uncharacterized protein.	0.526
RvY_01215-2	RvY_07050-1	A0A1D1ULL3	A0A1D1V108	Uncharacterized protein.	Uncharacterized protein.	0.456
RvY_01215-2	RvY_08734-1	A0A1D1ULL3	A0A1D1VEX5	Uncharacterized protein.	SF4 helicase domain-containing protein.	0.772
RvY_01215-2	RvY_09572-1	A0A1D1ULL3	A0A1D1VBZ8	Uncharacterized protein.	Uncharacterized protein.	0.526
RvY_02171-1	RvY_08734-1	A0A1D1UPR0	A0A1D1VEX5	Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; ATP-specific succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	SF4 helicase domain-containing protein.	0.552
RvY_02171-1	RvY_13617-1	A0A1D1UPR0	A0A1D1VQN1	Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; ATP-specific succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	POLAc domain-containing protein.	0.563
RvY_05862-1	RvY_07050-1	A0A1D1UWJ7	A0A1D1V108	Uncharacterized protein.	Uncharacterized protein.	0.456
RvY_05862-1	RvY_08734-1	A0A1D1UWJ7	A0A1D1VEX5	Uncharacterized protein.	SF4 helicase domain-containing protein.	0.772
RvY_05862-1	RvY_09572-1	A0A1D1UWJ7	A0A1D1VBZ8	Uncharacterized protein.	Uncharacterized protein.	0.526
RvY_07050-1	RvY_01157-1	A0A1D1V108	A0A1D1ULD9	Uncharacterized protein.	ETS domain-containing protein.	0.551
RvY_07050-1	RvY_01215	A0A1D1V108	A0A1D1UGE8	Uncharacterized protein.	Uncharacterized protein.	0.456
RvY_07050-1	RvY_01215-2	A0A1D1V108	A0A1D1ULL3	Uncharacterized protein.	Uncharacterized protein.	0.456
RvY_07050-1	RvY_05862-1	A0A1D1V108	A0A1D1UWJ7	Uncharacterized protein.	Uncharacterized protein.	0.456
RvY_07050-1	RvY_08734-1	A0A1D1V108	A0A1D1VEX5	Uncharacterized protein.	SF4 helicase domain-containing protein.	0.637
RvY_07050-1	RvY_09572-1	A0A1D1V108	A0A1D1VBZ8	Uncharacterized protein.	Uncharacterized protein.	0.512