RvY_12918-1 protein (Ramazzottius varieornatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RvY_12918-1

40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (82 aa)

Predicted Functional Partners:

RvY_00677-1

0.999

RvY_00579-1

0.999

RvY_01605-1

0.999

RvY_01330-1

0.999

RvY_01600-1

0.999

RvY_00120-2

0.999

RvY_00564-1

0.999

RvY_00639-1

0.999

RvY_02417-1

0.999

RvY_02479-1

0.999

Your Current Organism:

Ramazzottius varieornatus

NCBI taxonomy Id: 947166
Other names: R. varieornatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RvY_00120-2	RvY_00564-1	A0A1D1UM71	A0A1D1UN41	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.999
RvY_00120-2	RvY_00579-1	A0A1D1UM71	A0A1D1UE73	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.999
RvY_00120-2	RvY_00639-1	A0A1D1UM71	A0A1D1UNA8	Uncharacterized protein.	Uncharacterized protein.	0.999
RvY_00120-2	RvY_00677-1	A0A1D1UM71	A0A1D1UDM4	Uncharacterized protein.	Uncharacterized protein.	0.999
RvY_00120-2	RvY_01330-1	A0A1D1UM71	A0A1D1UJI4	Uncharacterized protein.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
RvY_00120-2	RvY_01600-1	A0A1D1UM71	A0A1D1UKC5	Uncharacterized protein.	Ribosomal_L16 domain-containing protein.	0.999
RvY_00120-2	RvY_01605-1	A0A1D1UM71	A0A1D1UH63	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.999
RvY_00120-2	RvY_02417-1	A0A1D1UM71	A0A1D1UNE0	Uncharacterized protein.	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999
RvY_00120-2	RvY_02479-1	A0A1D1UM71	A0A1D1UNL0	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family.	0.999
RvY_00120-2	RvY_12918-1	A0A1D1UM71	A0A1D1VL39	Uncharacterized protein.	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.	0.999
RvY_00564-1	RvY_00120-2	A0A1D1UN41	A0A1D1UM71	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.999
RvY_00564-1	RvY_00579-1	A0A1D1UN41	A0A1D1UE73	Ubiquitin-like domain-containing protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.999
RvY_00564-1	RvY_00639-1	A0A1D1UN41	A0A1D1UNA8	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.999
RvY_00564-1	RvY_00677-1	A0A1D1UN41	A0A1D1UDM4	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.999
RvY_00564-1	RvY_01330-1	A0A1D1UN41	A0A1D1UJI4	Ubiquitin-like domain-containing protein.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
RvY_00564-1	RvY_01600-1	A0A1D1UN41	A0A1D1UKC5	Ubiquitin-like domain-containing protein.	Ribosomal_L16 domain-containing protein.	0.999
RvY_00564-1	RvY_01605-1	A0A1D1UN41	A0A1D1UH63	Ubiquitin-like domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.999
RvY_00564-1	RvY_02417-1	A0A1D1UN41	A0A1D1UNE0	Ubiquitin-like domain-containing protein.	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999
RvY_00564-1	RvY_02479-1	A0A1D1UN41	A0A1D1UNL0	Ubiquitin-like domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family.	0.999
RvY_00564-1	RvY_12918-1	A0A1D1UN41	A0A1D1VL39	Ubiquitin-like domain-containing protein.	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.	0.999