STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHI3L1Chitinase 3 like 1; Belongs to the glycosyl hydrolase 18 family. (493 aa)    
Predicted Functional Partners:
IL13RA2
Interleukin 13 receptor subunit alpha 2.
    
 
 0.748
COX5B
Cytochrome c oxidase subunit 5B.
   
 0.729
LOC100401281
Uncharacterized protein.
   
 0.565
COX5A
Uncharacterized protein.
   
 0.565
SYT13
Synaptotagmin-13 isoform 1.
   
  
 0.564
TRIR
Telomerase RNA component interacting RNase.
   
 0.543
LOC100390127
Cytochrome c oxidase subunit; Belongs to the cytochrome c oxidase subunit 6B.
   
 0.543
F7HV77_CALJA
Uncharacterized protein.
   
 0.543
ENSCJAP00000073308
Uncharacterized protein.
   
 0.543
COX6B2
Uncharacterized protein.
   
 0.543
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.