STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PKHD1PKHD1 ciliary IPT domain containing fibrocystin/polyductin. (4074 aa)    
Predicted Functional Partners:
PKD2
Polycystin 2, transient receptor potential cation channel.
      
 0.844
UMOD
Uromodulin.
    
 0.667
AP5B1
Adaptor related protein complex 5 subunit beta 1.
    
 0.595
NPHP3
TPR_REGION domain-containing protein.
     
 0.591
ETFB
Electron transfer flavoprotein subunit beta.
      
 0.569
GLIS2
GLIS family zinc finger 2.
     
 0.564
AHI1
Abelson helper integration site 1.
    
 
 0.560
FXYD2
FXYD domain-containing ion transport regulator; Belongs to the FXYD family.
      
 0.521
ETFDH
Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.
      
 0.501
IFT88
Intraflagellar transport 88.
     
 0.490
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
Server load: medium (72%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.