STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAFD1TRAF-type zinc finger domain-containing protein 1. (581 aa)    
Predicted Functional Partners:
TIFA
TRAF-interacting protein with FHA domain-containing protein A.
    
 0.625
CD177
UPAR/Ly6 domain-containing protein.
    
 
 0.567
ENSCJAP00000065384
Uncharacterized protein.
    
 
 0.567
S100A8
Protein S100; Belongs to the S-100 family.
    
 0.565
MIB2
Mindbomb E3 ubiquitin protein ligase 2.
   
 0.530
ITSN2
Intersectin 2.
   
 0.473
ENSCJAP00000078263
Uncharacterized protein.
   
 0.473
ENSCJAP00000068236
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.471
UBE2V1
TMEM189_B_dmain domain-containing protein.
   
 0.471
SNX10
Sorting nexin-10 isoform 1.
    
 
 0.466
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.