STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BNIP1Vesicle transport protein SEC20 isoform BNIP1. (228 aa)    
Predicted Functional Partners:
USE1
Unconventional SNARE in the ER 1.
    
 0.998
RINT1
RAD50-interacting protein 1.
    
 0.993
SEC22B
SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family.
   
 0.992
STX18
Syntaxin 18.
   
 0.963
SEC22A
SEC22 homolog A, vesicle trafficking protein; Belongs to the synaptobrevin family.
   
 0.910
SEC22C
Vesicle-trafficking protein SEC22c isoform a; Belongs to the synaptobrevin family.
   
 0.910
RNF152
E3 ubiquitin-protein ligase RNF152.
      
 0.892
NSF
N-ethylmaleimide sensitive factor, vesicle fusing ATPase.
    
 0.852
NAPA
NSF attachment protein alpha.
    
 0.835
ZW10
Zw10 kinetochore protein.
    
 0.830
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.