ENSCJAP00000067340 protein (Callithrix jacchus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCJAP00000067340

Ubiquitin-like domain-containing protein. (143 aa)

Predicted Functional Partners:

FAU

0.973

ENSCJAP00000077762

0.973

ENSCJAP00000078156

0.973

ENSCJAP00000078253

0.973

ENSCJAP00000068236

0.958

UBE2V1

0.958

RPS3

0.945

MYSM1

0.943

RPL18

0.940

RPS16

0.939

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCJAP00000067340	ENSCJAP00000068236	ENSCJAP00000067340	ENSCJAP00000068236	Ubiquitin-like domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.958
ENSCJAP00000067340	ENSCJAP00000077762	ENSCJAP00000067340	ENSCJAP00000077762	Ubiquitin-like domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.973
ENSCJAP00000067340	ENSCJAP00000078156	ENSCJAP00000067340	ENSCJAP00000078156	Ubiquitin-like domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.973
ENSCJAP00000067340	ENSCJAP00000078253	ENSCJAP00000067340	ENSCJAP00000078253	Ubiquitin-like domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.973
ENSCJAP00000067340	FAU	ENSCJAP00000067340	ENSCJAP00000004437	Ubiquitin-like domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.973
ENSCJAP00000067340	MYSM1	ENSCJAP00000067340	ENSCJAP00000029506	Ubiquitin-like domain-containing protein.	Myb like, SWIRM and MPN domains 1.	0.943
ENSCJAP00000067340	RPL18	ENSCJAP00000067340	ENSCJAP00000000642	Ubiquitin-like domain-containing protein.	Ribosomal protein L18.	0.940
ENSCJAP00000067340	RPS16	ENSCJAP00000067340	ENSCJAP00000026068	Ubiquitin-like domain-containing protein.	Ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.	0.939
ENSCJAP00000067340	RPS3	ENSCJAP00000067340	ENSCJAP00000028461	Ubiquitin-like domain-containing protein.	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	0.945
ENSCJAP00000067340	UBE2V1	ENSCJAP00000067340	ENSCJAP00000078281	Ubiquitin-like domain-containing protein.	TMEM189_B_dmain domain-containing protein.	0.958
ENSCJAP00000068236	ENSCJAP00000067340	ENSCJAP00000068236	ENSCJAP00000067340	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.958
ENSCJAP00000068236	ENSCJAP00000077762	ENSCJAP00000068236	ENSCJAP00000077762	UBIQUITIN_CONJUGAT_2 domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.934
ENSCJAP00000068236	ENSCJAP00000078156	ENSCJAP00000068236	ENSCJAP00000078156	UBIQUITIN_CONJUGAT_2 domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.934
ENSCJAP00000068236	ENSCJAP00000078253	ENSCJAP00000068236	ENSCJAP00000078253	UBIQUITIN_CONJUGAT_2 domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.934
ENSCJAP00000068236	FAU	ENSCJAP00000068236	ENSCJAP00000004437	UBIQUITIN_CONJUGAT_2 domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.934
ENSCJAP00000068236	UBE2V1	ENSCJAP00000068236	ENSCJAP00000078281	UBIQUITIN_CONJUGAT_2 domain-containing protein.	TMEM189_B_dmain domain-containing protein.	0.948
ENSCJAP00000077762	ENSCJAP00000067340	ENSCJAP00000077762	ENSCJAP00000067340	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ubiquitin-like domain-containing protein.	0.973
ENSCJAP00000077762	ENSCJAP00000068236	ENSCJAP00000077762	ENSCJAP00000068236	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.934
ENSCJAP00000077762	ENSCJAP00000078156	ENSCJAP00000077762	ENSCJAP00000078156	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.905
ENSCJAP00000077762	ENSCJAP00000078253	ENSCJAP00000077762	ENSCJAP00000078253	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.905