STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ63902.1Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase. (270 aa)    
Predicted Functional Partners:
SIQ66058.1
Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase.
  
  
  0.933
SIR25592.1
alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase.
  
 
 0.672
SIQ63923.1
Multidrug transporter EmrE.
       0.668
SIR25499.1
alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH.
  
 
 0.601
SIR25534.1
alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase.
  
 
 0.600
SIR25517.1
alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI.
  
 
 0.596
SIQ63878.1
Putative aldouronate transport system substrate-binding protein.
       0.553
lipA
Lipoic acid synthetase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
    
 0.525
SIR40972.1
Uncharacterized protein YoxC, contains an MCP-like domain.
   
    0.517
SIR25572.1
alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL.
  
  
 0.458
Your Current Organism:
Paenibacillus macquariensis
NCBI taxonomy Id: 948756
Other names: ATCC 23464, Bacillus macquariensis, Bacillus sp. NCIM2474, CCUG 37394, CIP 103269, DSM 2, LMG 13289, LMG 6935, LMG:13289, LMG:6935, NCIB 9934, NCIB:9934, NCTC 10419, NRRL B-14306, NRRL:B:14306, P. macquariensis
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