STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VIMVimentin; Belongs to the intermediate filament family. (466 aa)    
Predicted Functional Partners:
BANF2
Barrier to autointegration factor 2.
   
 0.613
HOPX
HOP homeobox.
   
  
 0.543
PAX6
Uncharacterized protein.
    
 
 0.510
NES
Nestin; Belongs to the intermediate filament family.
    
 
0.502
MEF2C
Myocyte-specific enhancer factor 2C isoform 1.
   
  
 0.498
FAM107A
Uncharacterized protein.
   
  
 0.479
ASCL1
Achaete-scute family bHLH transcription factor 1.
   
  
 0.471
ERMN
Ermin.
   
  
 0.464
PVALB
Parvalbumin; Belongs to the parvalbumin family.
    
 0.464
TH
Tyrosine hydroxylase.
   
  
 0.460
Your Current Organism:
Macaca mulatta
NCBI taxonomy Id: 9544
Other names: M. mulatta, Rhesus monkey, rhesus macaque, rhesus macaques, rhesus monkeys
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