Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CDC40 | CDC5L | ENSMMUP00000058230 | ENSMMUP00000018901 | Pre-mRNA-processing factor 17. | Cell division cycle 5-like protein. | 0.989 |
CDC40 | DDX23 | ENSMMUP00000058230 | ENSMMUP00000053303 | Pre-mRNA-processing factor 17. | Probable ATP-dependent RNA helicase DDX23. | 0.692 |
CDC40 | EFTUD2 | ENSMMUP00000058230 | ENSMMUP00000017238 | Pre-mRNA-processing factor 17. | 116 kDa U5 small nuclear ribonucleoprotein component isoform a. | 0.987 |
CDC40 | PRPF19 | ENSMMUP00000058230 | ENSMMUP00000019079 | Pre-mRNA-processing factor 17. | Pre-mRNA processing factor 19. | 0.978 |
CDC40 | PRPF6 | ENSMMUP00000058230 | ENSMMUP00000020409 | Pre-mRNA-processing factor 17. | Pre-mRNA processing factor 6. | 0.643 |
CDC40 | PRPF8 | ENSMMUP00000058230 | ENSMMUP00000069673 | Pre-mRNA-processing factor 17. | Pre-mRNA processing factor 8. | 0.982 |
CDC40 | SNRNP200 | ENSMMUP00000058230 | ENSMMUP00000030627 | Pre-mRNA-processing factor 17. | U5 small nuclear ribonucleoprotein 200 kDa helicase. | 0.980 |
CDC40 | SNRNP40 | ENSMMUP00000058230 | ENSMMUP00000025498 | Pre-mRNA-processing factor 17. | WD_REPEATS_REGION domain-containing protein. | 0.969 |
CDC40 | SNRPD1 | ENSMMUP00000058230 | ENSMMUP00000067855 | Pre-mRNA-processing factor 17. | Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. | 0.978 |
CDC40 | TXNL4A | ENSMMUP00000058230 | ENSMMUP00000002155 | Pre-mRNA-processing factor 17. | Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. | 0.621 |
CDC5L | CDC40 | ENSMMUP00000018901 | ENSMMUP00000058230 | Cell division cycle 5-like protein. | Pre-mRNA-processing factor 17. | 0.989 |
CDC5L | DDX23 | ENSMMUP00000018901 | ENSMMUP00000053303 | Cell division cycle 5-like protein. | Probable ATP-dependent RNA helicase DDX23. | 0.579 |
CDC5L | EFTUD2 | ENSMMUP00000018901 | ENSMMUP00000017238 | Cell division cycle 5-like protein. | 116 kDa U5 small nuclear ribonucleoprotein component isoform a. | 0.988 |
CDC5L | PRPF19 | ENSMMUP00000018901 | ENSMMUP00000019079 | Cell division cycle 5-like protein. | Pre-mRNA processing factor 19. | 0.997 |
CDC5L | PRPF6 | ENSMMUP00000018901 | ENSMMUP00000020409 | Cell division cycle 5-like protein. | Pre-mRNA processing factor 6. | 0.539 |
CDC5L | PRPF8 | ENSMMUP00000018901 | ENSMMUP00000069673 | Cell division cycle 5-like protein. | Pre-mRNA processing factor 8. | 0.987 |
CDC5L | SNRNP200 | ENSMMUP00000018901 | ENSMMUP00000030627 | Cell division cycle 5-like protein. | U5 small nuclear ribonucleoprotein 200 kDa helicase. | 0.976 |
CDC5L | SNRNP40 | ENSMMUP00000018901 | ENSMMUP00000025498 | Cell division cycle 5-like protein. | WD_REPEATS_REGION domain-containing protein. | 0.970 |
CDC5L | SNRPD1 | ENSMMUP00000018901 | ENSMMUP00000067855 | Cell division cycle 5-like protein. | Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. | 0.974 |
DDX23 | CDC40 | ENSMMUP00000053303 | ENSMMUP00000058230 | Probable ATP-dependent RNA helicase DDX23. | Pre-mRNA-processing factor 17. | 0.692 |
page 1 of 6