STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_1126ABC transporter family protein. (589 aa)    
Predicted Functional Partners:
DM40_2682
Acyl CoA binding family protein.
     
 0.876
alc
Allantoicase: allantoicase; Belongs to the allantoicase family.
   
 
 0.863
alc-2
Allantoicase: allantoicase; Belongs to the allantoicase family.
   
 
 0.863
recA
Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
    
   0.856
hflC
HflC protein; HflC and HflK could regulate a protease.
    
  0.554
hflK
HflK protein; HflC and HflK could encode or regulate a protease.
    
  0.554
DM40_2637
SPFH domain / Band 7 family protein.
    
  0.554
DM40_3718
SPFH domain / Band 7 family protein.
    
  0.554
DM40_4928
SPFH domain / Band 7 family protein.
    
  0.554
DM40_5385
AMP-binding enzyme family protein.
   
 
 0.500
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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