STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjjLL-galactonate transporter. (439 aa)    
Predicted Functional Partners:
DM40_2089
Dihydrodipicolinate synthetase family protein; Belongs to the DapA family.
 
    0.752
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
       0.586
DM40_2086
Periplasmic binding s and sugar binding domain of LacI family protein.
 
     0.479
DM40_4966
Sugar (and other) transporter family protein.
  
  
  0.454
garD
galactar-dH20: galactarate dehydratase.
 
  
 0.417
DM40_1305
pfkB carbohydrate kinase family protein.
     
 0.413
DM40_2166
pfkB carbohydrate kinase family protein.
      
 0.412
DM40_228
Hypothetical protein.
      
 0.412
DM40_573
pfkB carbohydrate kinase family protein; Belongs to the carbohydrate kinase PfkB family.
      
 0.412
astB
Succinylarginine dihydrolase; Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)- succinylornithine, ammonia and CO(2).
      
 0.405
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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