STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
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[Homology]
Score
DM40_3019Rhamnosyltran: rhamnosyltransferase family protein. (312 aa)    
Predicted Functional Partners:
DM40_3021
Hypothetical protein; Glycosyltransferase family 28 N-terminal domain protein.
 
  
 0.883
DM40_3022
Isoprenylcysteine carboxyl methyltransferase family protein.
 
     0.781
emrB-2
efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 family protein; Belongs to the major facilitator superfamily.
       0.770
rfbD
rmlD: dTDP-4-dehydrorhamnose reductase.
 
  
 0.712
DM40_1514
Hypothetical protein.
  
     0.697
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
 
  
 0.696
rfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
 
  
 0.690
DM40_3806
wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase.
  
  
 0.674
DM40_3835
wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase.
  
  
 0.674
DM40_4242
wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase.
  
  
 0.674
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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