STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_3273Type I phosphodiesterase / nucleotide pyrophosphatase family protein. (550 aa)    
Predicted Functional Partners:
DM40_4719
Calcineurin-like phosphoesterase family protein.
  
 
  0.665
DM40_4796
Putative cheA signal transduction histidine kinase.
  
     0.594
DM40_5784
Alginate lyase family protein.
  
     0.590
DM40_4823
Natural resistance-associated macrophage family protein.
 
 
 0.573
pgaA
PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA.
  
  
  0.540
DM40_4194
Glycosyl hydrolases 31 family protein; Belongs to the glycosyl hydrolase 31 family.
    
  0.538
add
Adenosine deaminase; Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism.
     
 0.537
DM40_804
Gram-negative porin family protein.
  
     0.537
DM40_2471
Zinc-finger family protein.
  
     0.532
DM40_152
Hypothetical protein.
  
     0.524
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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