STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_366Phospholipase D family protein. (540 aa)    
Predicted Functional Partners:
DM40_1333
Phosphatidylglycerophosphatase A family protein; Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG).
  
  
 0.920
DM40_3905
Phospholipase D family protein.
  
  
 
0.911
DM40_1831
PC_PLC: phospholipase C, phosphocholine-specific.
     
 0.901
DM40_3688
Phosphoesterase family protein.
     
 0.901
DM40_4485
Sulfatase family protein.
     
 0.901
DM40_555
PC_PLC: phospholipase C, phosphocholine-specific.
     
 0.901
DM40_2828
HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, IB family protein.
     
 0.900
DM40_4340
Phosphoesterase family protein.
     
  0.900
DM40_367
FCD domain protein.
       0.460
DM40_365
Hypothetical protein; Class II Aldolase and Adducin N-terminal domain protein.
       0.430
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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