STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4137Bacterial regulatory helix-turn-helix, lysR family protein; Belongs to the LysR transcriptional regulatory family. (297 aa)    
Predicted Functional Partners:
DM40_4139
L-2-amino-thiazoline-4-carboxylic acid hydrolase family protein.
 
    0.583
DM40_4138
Receptor ligand binding region family protein.
       0.509
DM40_4140
Hydantase: amidase, hydantoinase/carbamoylase family protein.
       0.485
DM40_4136
Transcriptional regulator, CopG family.
       0.479
DM40_4919
Bacterial regulatory helix-turn-helix, lysR family protein; Belongs to the LysR transcriptional regulatory family.
  
     0.444
DM40_1178
Bacterial regulatory helix-turn-helix, lysR family protein.
  
     0.438
DM40_5557
Bacterial regulatory helix-turn-helix, lysR family protein.
  
     0.429
DM40_4053
Bacterial regulatory helix-turn-helix, lysR family protein.
  
     0.417
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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