STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cydB-2cydB: cytochrome d ubiquinol oxidase, subunit II. (378 aa)    
Predicted Functional Partners:
cydA
Cytochrome d ubiquinol oxidase subunit 1.
 
 0.993
DM40_5342
Bacterial Cytochrome Ubiquinol Oxidase family protein.
 
 0.961
DM40_3263
Bacterial Cytochrome Ubiquinol Oxidase family protein.
 
 0.959
DM40_5250
Bacterial Cytochrome Ubiquinol Oxidase family protein.
 
 0.959
cydB
cydB: cytochrome d ubiquinol oxidase, subunit II.
  
  
 
0.956
cydB-3
cydB: cytochrome d ubiquinol oxidase, subunit II.
  
  
 
0.928
cydX
cyd_oper_ybgT: cyd operon protein YbgT.
 
 
 0.920
DM40_418
Hypothetical protein.
       0.673
DM40_2336
cyd_oper_ybgT: cyd operon protein YbgT.
  
 
 0.596
nuoG
NADH dehydrogenase (quinone), G subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.
    
 0.580
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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