STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_477Hypothetical protein. (101 aa)    
Predicted Functional Partners:
actP
Sss: transporter, solute:sodium symporter family protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.991
actP-2
Sss: transporter, solute:sodium symporter family protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.967
DM40_2834
Na_symport_lg: putative sodium:solute symporter, VC_2705 subfamily protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.905
aceB
malate_syn_A: malate synthase A; Belongs to the malate synthase family.
   
    0.554
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
   
    0.554
DM40_481
enoyl-CoA hydratase/isomerase family protein.
  
    0.524
DM40_478
coA-transferase III family protein; Belongs to the CoA-transferase III family.
       0.523
DM40_1974
AMP-binding enzyme family protein.
  
  
 0.512
acs
ac_CoA_lig_AcsA: acetate--CoA ligase.
  
  
 0.512
DM40_4924
AMP-binding enzyme family protein.
  
  
 0.512
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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