STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_5070Hypothetical protein. (167 aa)    
Predicted Functional Partners:
DM40_5067
Outer membrane efflux family protein.
 
    0.841
DM40_5069
type_I_sec_LssB: type I secretion system ATPase family protein.
 
  
 0.827
DM40_5068
type_I_hlyD: type I secretion membrane fusion, HlyD family protein.
 
  
 0.690
DM40_3083
Maj_tail_phi13: phage major tail, phi13 family protein.
 
     0.670
DM40_2751
comEC_Rec2: DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.545
DM40_1000
Putative site-specific DNA-methyltransferase.
  
     0.534
DM40_3082
Hypothetical protein.
 
     0.526
DM40_63
Hypothetical protein; Pili and flagellar-assembly chaperone, PapD N-terminal domain protein.
  
    0.526
DM40_64
Outer membrane usher family protein.
  
    0.526
DM40_4887
Autotrans_barl: outer membrane autotransporter barrel domain protein.
  
  
 0.476
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.