STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_5517mmgE/PrpD family protein. (474 aa)    
Predicted Functional Partners:
DM40_5511
mmgE/PrpD family protein.
 
     0.804
DM40_5516
mmgE/PrpD family protein.
 
    
0.713
DM40_2314
glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein.
 
    0.651
DM40_5518
hpcH/HpaI aldolase/citrate lyase family protein.
 
    0.646
DM40_3647
Phosphoenolpyruvate phosphomutase family protein.
 
  
 0.600
DM40_5531
hpcH/HpaI aldolase/citrate lyase family protein.
 
    0.597
DM40_2506
enoyl-CoA hydratase/isomerase family protein.
 
 
  0.595
prpB
Methylisocitrate lyase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. Belongs to the isocitrate lyase/PEP mutase superfamily. Methylisocitrate lyase family.
 
  
 0.590
DM40_5515
UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain protein.
 
     0.588
DM40_4876
Phosphoenolpyruvate phosphomutase family protein.
 
  
 0.582
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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