STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_5563GMC oxidoreductase family protein. (540 aa)    
Predicted Functional Partners:
DM40_5643
Hypothetical protein.
    
 0.874
DM40_5564
Sugar (and other) transporter family protein.
    
  0.770
DM40_1689
lcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD.
    
  0.730
DM40_2004
Bacterial cellulose synthase subunit; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.
    
  0.730
pgaA
PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA.
    
  0.730
DM40_2486
Ankyrin repeat family protein.
    
 0.720
DM40_4882
Putative membrane protein.
    
 0.720
DM40_4908
Ankyrin repeat family protein.
    
 0.720
DM40_4561
Membrane bound FAD containing D-sorbitol dehydrogenase family protein.
   
   0.670
glk
Glk: glucokinase; Belongs to the bacterial glucokinase family.
     
 0.508
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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