Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AGER | LOC101008481 | ENSPANP00000012370 | ENSPANP00000013674 | Advanced glycosylation end-product specific receptor. | Uncharacterized protein. | 0.575 |
BECN1 | HMGB4 | ENSPANP00000020731 | ENSPANP00000004679 | Beclin 1. | High mobility group box 4. | 0.440 |
BECN1 | LOC101001750 | ENSPANP00000020731 | ENSPANP00000002224 | Beclin 1. | Uncharacterized protein. | 0.440 |
BECN1 | LOC101008481 | ENSPANP00000020731 | ENSPANP00000013674 | Beclin 1. | Uncharacterized protein. | 0.852 |
BECN1 | TP53 | ENSPANP00000020731 | ENSPANP00000033477 | Beclin 1. | Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family. | 0.503 |
GSDMD | LOC101008481 | ENSPANP00000043991 | ENSPANP00000013674 | Gasdermin D. | Uncharacterized protein. | 0.572 |
HMGB4 | BECN1 | ENSPANP00000004679 | ENSPANP00000020731 | High mobility group box 4. | Beclin 1. | 0.440 |
HMGB4 | LOC101008481 | ENSPANP00000004679 | ENSPANP00000013674 | High mobility group box 4. | Uncharacterized protein. | 0.572 |
HMGB4 | LY96 | ENSPANP00000004679 | ENSPANP00000011468 | High mobility group box 4. | Lymphocyte antigen 96. | 0.478 |
HMGB4 | RAG1 | ENSPANP00000004679 | ENSPANP00000007149 | High mobility group box 4. | V(D)J recombination-activating protein 1; Catalytic component of the RAG complex, a multiprotein complex that mediates the DNA cleavage phase during V(D)J recombination. V(D)J recombination assembles a diverse repertoire of immunoglobulin and T-cell receptor genes in developing B and T- lymphocytes through rearrangement of different V (variable), in some cases D (diversity), and J (joining) gene segments. In the RAG complex, RAG1 mediates the DNA-binding to the conserved recombination signal sequences (RSS) and catalyzes the DNA cleavage activities by introducing a double-strand break [...] | 0.403 |
HMGB4 | TLR4 | ENSPANP00000004679 | ENSPANP00000029907 | High mobility group box 4. | Toll-like receptor 4; Cooperates with LY96 and CD14 to mediate the innate immune response to bacterial lipopolysaccharide (LPS). Acts via MYD88, TIRAP and TRAF6, leading to NF-kappa-B activation, cytokine secretion and the inflammatory response. Also involved in LPS-independent inflammatory responses triggered by free fatty acids, such as palmitate. In complex with TLR6, promotes sterile inflammation in monocytes/macrophages in response to oxidized low-density lipoprotein (oxLDL) or amyloid-beta 42. In this context, the initial signal is provided by oxLDL- or amyloid-beta 42-binding to [...] | 0.447 |
HMGB4 | TP53 | ENSPANP00000004679 | ENSPANP00000033477 | High mobility group box 4. | Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family. | 0.588 |
HNRNPA2B1 | LOC101008481 | ENSPANP00000022566 | ENSPANP00000013674 | Heterogeneous nuclear ribonucleoprotein A2/B1. | Uncharacterized protein. | 0.669 |
LOC101001750 | BECN1 | ENSPANP00000002224 | ENSPANP00000020731 | Uncharacterized protein. | Beclin 1. | 0.440 |
LOC101001750 | LOC101008481 | ENSPANP00000002224 | ENSPANP00000013674 | Uncharacterized protein. | Uncharacterized protein. | 0.564 |
LOC101001750 | LY96 | ENSPANP00000002224 | ENSPANP00000011468 | Uncharacterized protein. | Lymphocyte antigen 96. | 0.478 |
LOC101001750 | RAG1 | ENSPANP00000002224 | ENSPANP00000007149 | Uncharacterized protein. | V(D)J recombination-activating protein 1; Catalytic component of the RAG complex, a multiprotein complex that mediates the DNA cleavage phase during V(D)J recombination. V(D)J recombination assembles a diverse repertoire of immunoglobulin and T-cell receptor genes in developing B and T- lymphocytes through rearrangement of different V (variable), in some cases D (diversity), and J (joining) gene segments. In the RAG complex, RAG1 mediates the DNA-binding to the conserved recombination signal sequences (RSS) and catalyzes the DNA cleavage activities by introducing a double-strand break [...] | 0.403 |
LOC101001750 | TLR4 | ENSPANP00000002224 | ENSPANP00000029907 | Uncharacterized protein. | Toll-like receptor 4; Cooperates with LY96 and CD14 to mediate the innate immune response to bacterial lipopolysaccharide (LPS). Acts via MYD88, TIRAP and TRAF6, leading to NF-kappa-B activation, cytokine secretion and the inflammatory response. Also involved in LPS-independent inflammatory responses triggered by free fatty acids, such as palmitate. In complex with TLR6, promotes sterile inflammation in monocytes/macrophages in response to oxidized low-density lipoprotein (oxLDL) or amyloid-beta 42. In this context, the initial signal is provided by oxLDL- or amyloid-beta 42-binding to [...] | 0.447 |
LOC101001750 | TP53 | ENSPANP00000002224 | ENSPANP00000033477 | Uncharacterized protein. | Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family. | 0.596 |
LOC101008481 | AGER | ENSPANP00000013674 | ENSPANP00000012370 | Uncharacterized protein. | Advanced glycosylation end-product specific receptor. | 0.575 |
page 1 of 3