Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ALYREF | CHTOP | ENSPPYP00000009820 | ENSPPYP00000000937 | Aly/REF export factor. | CHTOP isoform 2. | 0.887 |
ALYREF | DDX39B | ENSPPYP00000009820 | ENSPPYP00000018375 | Aly/REF export factor. | Spliceosome RNA helicase DDX39B; Involved in nuclear export of spliced and unspliced mRNA. Assembling component of the TREX complex which is thought to couple mRNA transcription, processing and nuclear export, and specifically associates with spliced mRNA and not with unspliced pre-mRNA. TREX is recruited to spliced mRNAs by a transcription-independent mechanism, binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export to the cytoplasm via the TAP/NFX1 pat [...] | 0.999 |
ALYREF | EIF4A3 | ENSPPYP00000009820 | ENSPPYP00000009779 | Aly/REF export factor. | Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. | 0.999 |
ALYREF | RBM8A | ENSPPYP00000009820 | ENSPPYP00000001082 | Aly/REF export factor. | RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. | 0.942 |
ALYREF | SARNP | ENSPPYP00000009820 | ENSPPYP00000005276 | Aly/REF export factor. | SAP domain-containing ribonucleoprotein; Binds both single-stranded and double-stranded DNA with higher affinity for the single-stranded form. Specifically binds to scaffold/matrix attachment region DNA. Also binds single-stranded RNA. Enhances RNA unwinding activity of DDX39A. May participate in important transcriptional or translational control of cell growth, metabolism and carcinogenesis. Component of the TREX complex which is thought to couple mRNA transcription, processing and nuclear export, and specifically associates with spliced mRNA and not with unspliced pre- mRNA. TREX is [...] | 0.975 |
ALYREF | THOC1 | ENSPPYP00000009820 | ENSPPYP00000010159 | Aly/REF export factor. | THOC1 isoform 3. | 0.998 |
ALYREF | THOC2 | ENSPPYP00000009820 | ENSPPYP00000023166 | Aly/REF export factor. | THOC2 isoform 2. | 0.999 |
ALYREF | THOC3 | ENSPPYP00000009820 | ENSPPYP00000017981 | Aly/REF export factor. | THOC3 isoform 1. | 0.997 |
ALYREF | THOC5 | ENSPPYP00000009820 | ENSPPYP00000013043 | Aly/REF export factor. | THOC5 isoform 1. | 0.979 |
ALYREF | THOC7 | ENSPPYP00000009820 | ENSPPYP00000015374 | Aly/REF export factor. | THOC7 isoform 1. | 0.957 |
CHTOP | ALYREF | ENSPPYP00000000937 | ENSPPYP00000009820 | CHTOP isoform 2. | Aly/REF export factor. | 0.887 |
CHTOP | DDX39B | ENSPPYP00000000937 | ENSPPYP00000018375 | CHTOP isoform 2. | Spliceosome RNA helicase DDX39B; Involved in nuclear export of spliced and unspliced mRNA. Assembling component of the TREX complex which is thought to couple mRNA transcription, processing and nuclear export, and specifically associates with spliced mRNA and not with unspliced pre-mRNA. TREX is recruited to spliced mRNAs by a transcription-independent mechanism, binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export to the cytoplasm via the TAP/NFX1 pat [...] | 0.994 |
CHTOP | EIF4A3 | ENSPPYP00000000937 | ENSPPYP00000009779 | CHTOP isoform 2. | Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. | 0.770 |
CHTOP | RBM8A | ENSPPYP00000000937 | ENSPPYP00000001082 | CHTOP isoform 2. | RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. | 0.498 |
CHTOP | SARNP | ENSPPYP00000000937 | ENSPPYP00000005276 | CHTOP isoform 2. | SAP domain-containing ribonucleoprotein; Binds both single-stranded and double-stranded DNA with higher affinity for the single-stranded form. Specifically binds to scaffold/matrix attachment region DNA. Also binds single-stranded RNA. Enhances RNA unwinding activity of DDX39A. May participate in important transcriptional or translational control of cell growth, metabolism and carcinogenesis. Component of the TREX complex which is thought to couple mRNA transcription, processing and nuclear export, and specifically associates with spliced mRNA and not with unspliced pre- mRNA. TREX is [...] | 0.990 |
CHTOP | THOC1 | ENSPPYP00000000937 | ENSPPYP00000010159 | CHTOP isoform 2. | THOC1 isoform 3. | 0.828 |
CHTOP | THOC2 | ENSPPYP00000000937 | ENSPPYP00000023166 | CHTOP isoform 2. | THOC2 isoform 2. | 0.886 |
CHTOP | THOC3 | ENSPPYP00000000937 | ENSPPYP00000017981 | CHTOP isoform 2. | THOC3 isoform 1. | 0.806 |
CHTOP | THOC5 | ENSPPYP00000000937 | ENSPPYP00000013043 | CHTOP isoform 2. | THOC5 isoform 1. | 0.877 |
CHTOP | THOC7 | ENSPPYP00000000937 | ENSPPYP00000015374 | CHTOP isoform 2. | THOC7 isoform 1. | 0.855 |
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