Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ATRX | DAXX | ENSPPYP00000022935 | ENSPPYP00000019339 | ATRX isoform 1. | Death domain associated protein. | 0.999 |
ATRX | H3-3A | ENSPPYP00000022935 | ENSPPYP00000000166 | ATRX isoform 1. | Histone H3.3; Variant histone H3 which replaces conventional H3 in a wide range of nucleosomes in active genes. Constitutes the predominant form of histone H3 in non-dividing cells and is incorporated into chromatin independently of DNA synthesis. Deposited at sites of nucleosomal displacement throughout transcribed genes, suggesting that it represents an epigenetic imprint of transcriptionally active chromatin. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in [...] | 0.841 |
ATRX | H3-4 | ENSPPYP00000022935 | ENSPPYP00000000136 | ATRX isoform 1. | Histone H3; Belongs to the histone H3 family. | 0.968 |
ATRX | H3C13 | ENSPPYP00000022935 | ENSPPYP00000022371 | ATRX isoform 1. | Histone H3. | 0.864 |
ATRX | LOC100436122-8 | ENSPPYP00000022935 | ENSPPYP00000023510 | ATRX isoform 1. | Histone H3.1. | 0.930 |
ATRX | LOC100449918 | ENSPPYP00000022935 | ENSPPYP00000001074 | ATRX isoform 1. | HIST2H3C isoform 1. | 0.864 |
ATRX | LOC100452761 | ENSPPYP00000022935 | ENSPPYP00000005023 | ATRX isoform 1. | Histone H3; Belongs to the histone H3 family. | 0.841 |
ATRX | MECP2 | ENSPPYP00000022935 | ENSPPYP00000023354 | ATRX isoform 1. | Methyl-CpG-binding protein 2; Chromosomal protein that binds to methylated DNA. It can bind specifically to a single methyl-CpG pair. It is not influenced by sequences flanking the methyl-CpGs. Binds both 5-methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC)-containing DNA, with a preference for 5-methylcytosine (5mC). | 0.864 |
ATRX | RAD51 | ENSPPYP00000022935 | ENSPPYP00000007198 | ATRX isoform 1. | DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] | 0.986 |
ATRX | TP53 | ENSPPYP00000022935 | ENSPPYP00000008923 | ATRX isoform 1. | Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family. | 0.846 |
DAXX | ATRX | ENSPPYP00000019339 | ENSPPYP00000022935 | Death domain associated protein. | ATRX isoform 1. | 0.999 |
DAXX | H3-3A | ENSPPYP00000019339 | ENSPPYP00000000166 | Death domain associated protein. | Histone H3.3; Variant histone H3 which replaces conventional H3 in a wide range of nucleosomes in active genes. Constitutes the predominant form of histone H3 in non-dividing cells and is incorporated into chromatin independently of DNA synthesis. Deposited at sites of nucleosomal displacement throughout transcribed genes, suggesting that it represents an epigenetic imprint of transcriptionally active chromatin. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in [...] | 0.846 |
DAXX | H3-4 | ENSPPYP00000019339 | ENSPPYP00000000136 | Death domain associated protein. | Histone H3; Belongs to the histone H3 family. | 0.678 |
DAXX | H3C13 | ENSPPYP00000019339 | ENSPPYP00000022371 | Death domain associated protein. | Histone H3. | 0.814 |
DAXX | LOC100436122-8 | ENSPPYP00000019339 | ENSPPYP00000023510 | Death domain associated protein. | Histone H3.1. | 0.708 |
DAXX | LOC100449918 | ENSPPYP00000019339 | ENSPPYP00000001074 | Death domain associated protein. | HIST2H3C isoform 1. | 0.814 |
DAXX | LOC100452761 | ENSPPYP00000019339 | ENSPPYP00000005023 | Death domain associated protein. | Histone H3; Belongs to the histone H3 family. | 0.846 |
DAXX | TP53 | ENSPPYP00000019339 | ENSPPYP00000008923 | Death domain associated protein. | Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family. | 0.996 |
H3-3A | ATRX | ENSPPYP00000000166 | ENSPPYP00000022935 | Histone H3.3; Variant histone H3 which replaces conventional H3 in a wide range of nucleosomes in active genes. Constitutes the predominant form of histone H3 in non-dividing cells and is incorporated into chromatin independently of DNA synthesis. Deposited at sites of nucleosomal displacement throughout transcribed genes, suggesting that it represents an epigenetic imprint of transcriptionally active chromatin. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in [...] | ATRX isoform 1. | 0.841 |
H3-3A | DAXX | ENSPPYP00000000166 | ENSPPYP00000019339 | Histone H3.3; Variant histone H3 which replaces conventional H3 in a wide range of nucleosomes in active genes. Constitutes the predominant form of histone H3 in non-dividing cells and is incorporated into chromatin independently of DNA synthesis. Deposited at sites of nucleosomal displacement throughout transcribed genes, suggesting that it represents an epigenetic imprint of transcriptionally active chromatin. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in [...] | Death domain associated protein. | 0.846 |
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