STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAF1BTATA-box binding protein associated factor, RNA polymerase I subunit B. (588 aa)    
Predicted Functional Partners:
TAF1A
TATA-box binding protein associated factor, RNA polymerase I subunit A.
   
 0.977
TAF1C
TATA-box binding protein associated factor, RNA polymerase I subunit C.
    
 0.965
TAF1D
Uncharacterized protein.
    
 0.962
TBP
TATA-box binding protein.
    
 0.891
FANK1
Fibronectin type III and ankyrin repeat domains 1.
      
 0.870
ZNF274
Zinc finger protein 274.
      
 0.774
POLI
DNA polymerase iota.
      
 0.763
UBTF
Upstream binding transcription factor.
   
 0.738
TWISTNB
TWIST neighbor.
     
 0.713
POLR1B
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
     
 0.690
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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