STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TXNL4AThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)    
Predicted Functional Partners:
PRPF6
Pre-mRNA processing factor 6.
   
 0.970
DDX23
DEAD-box helicase 23.
   
 0.956
PRPF8
Pre-mRNA processing factor 8.
   
 0.955
PQBP1
Polyglutamine binding protein 1.
   
 0.951
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
   
 0.949
SNRNP40
Small nuclear ribonucleoprotein U5 subunit 40.
   
 0.945
ZMAT2
Zinc finger matrin-type 2.
   
 0.927
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
    
 0.897
PRPF38A
Pre-mRNA processing factor 38A.
   
 0.896
PRPF31
Nop domain-containing protein.
   
 0.893
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.