Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Dole_0754 | Dole_1817 | Hypothetical protein; KEGG: drm:Dred_2737 methyl-accepting chemotaxis sensory transducer. | TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: mba:Mbar_A1021 RelE protein. | 0.851 |
Dole_1759 | Dole_1817 | Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system. | TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: mba:Mbar_A1021 RelE protein. | 0.712 |
Dole_1814 | Dole_1815 | KEGG: rrs:RoseRS_2492 protein of unknown function DUF433. | KEGG: rca:Rcas_1637 hypothetical protein. | 0.824 |
Dole_1814 | Dole_1817 | KEGG: rrs:RoseRS_2492 protein of unknown function DUF433. | TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: mba:Mbar_A1021 RelE protein. | 0.453 |
Dole_1815 | Dole_1814 | KEGG: rca:Rcas_1637 hypothetical protein. | KEGG: rrs:RoseRS_2492 protein of unknown function DUF433. | 0.824 |
Dole_1815 | Dole_1817 | KEGG: rca:Rcas_1637 hypothetical protein. | TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: mba:Mbar_A1021 RelE protein. | 0.415 |
Dole_1816 | Dole_1817 | Hypothetical protein. | TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: mba:Mbar_A1021 RelE protein. | 0.773 |
Dole_1817 | Dole_0754 | TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: mba:Mbar_A1021 RelE protein. | Hypothetical protein; KEGG: drm:Dred_2737 methyl-accepting chemotaxis sensory transducer. | 0.851 |
Dole_1817 | Dole_1759 | TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: mba:Mbar_A1021 RelE protein. | Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system. | 0.712 |
Dole_1817 | Dole_1814 | TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: mba:Mbar_A1021 RelE protein. | KEGG: rrs:RoseRS_2492 protein of unknown function DUF433. | 0.453 |
Dole_1817 | Dole_1815 | TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: mba:Mbar_A1021 RelE protein. | KEGG: rca:Rcas_1637 hypothetical protein. | 0.415 |
Dole_1817 | Dole_1816 | TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: mba:Mbar_A1021 RelE protein. | Hypothetical protein. | 0.773 |
Dole_1817 | Dole_2120 | TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: mba:Mbar_A1021 RelE protein. | Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system. | 0.805 |
Dole_1817 | Dole_2606 | TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: mba:Mbar_A1021 RelE protein. | Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system. | 0.750 |
Dole_2120 | Dole_1817 | Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system. | TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: mba:Mbar_A1021 RelE protein. | 0.805 |
Dole_2606 | Dole_1817 | Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system. | TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: mba:Mbar_A1021 RelE protein. | 0.750 |