STOML3 protein (Mustela putorius) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

STOML3

Stomatin like 3. (291 aa)

Predicted Functional Partners:

ASIC3

0.752

CNGA4

0.700

RIC8B

0.652

PROSER1

0.584

RHBDL2

0.583

M3XLQ6_MUSPF

0.554

AFG3L2

0.554

SPG7

0.554

YME1L1

0.554

M3YYA4_MUSPF

0.554

Your Current Organism:

Mustela putorius

NCBI taxonomy Id: 9669
Other names: M. putorius furo, Mustela furo, Mustela putorius furo, black ferret, domestic ferret, ferret

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFG3L2	SPG7	ENSMPUP00000004454	ENSMPUP00000007503	AFG3 like matrix AAA peptidase subunit 2.	SPG7 matrix AAA peptidase subunit, paraplegin.	0.830
AFG3L2	STOML3	ENSMPUP00000004454	ENSMPUP00000014915	AFG3 like matrix AAA peptidase subunit 2.	Stomatin like 3.	0.554
ASIC3	STOML3	ENSMPUP00000008162	ENSMPUP00000014915	Acid sensing ion channel subunit 3; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.	Stomatin like 3.	0.752
CNGA4	RIC8B	ENSMPUP00000005743	ENSMPUP00000012057	Cyclic nucleotide gated channel subunit alpha 4.	RIC8 guanine nucleotide exchange factor B.	0.522
CNGA4	STOML3	ENSMPUP00000005743	ENSMPUP00000014915	Cyclic nucleotide gated channel subunit alpha 4.	Stomatin like 3.	0.700
M3XLQ6_MUSPF	STOML3	ENSMPUP00000000006	ENSMPUP00000014915	ATPase_AAA_core domain-containing protein.	Stomatin like 3.	0.554
M3YYA4_MUSPF	STOML3	ENSMPUP00000016314	ENSMPUP00000014915	Peptidase_M41 domain-containing protein.	Stomatin like 3.	0.554
PROSER1	STOML3	ENSMPUP00000014913	ENSMPUP00000014915	Proline and serine rich 1.	Stomatin like 3.	0.584
RHBDL2	STOML3	ENSMPUP00000014346	ENSMPUP00000014915	Rhomboid-related protein 2; Involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors; Belongs to the peptidase S54 family.	Stomatin like 3.	0.583
RIC8B	CNGA4	ENSMPUP00000012057	ENSMPUP00000005743	RIC8 guanine nucleotide exchange factor B.	Cyclic nucleotide gated channel subunit alpha 4.	0.522
RIC8B	STOML3	ENSMPUP00000012057	ENSMPUP00000014915	RIC8 guanine nucleotide exchange factor B.	Stomatin like 3.	0.652
SPG7	AFG3L2	ENSMPUP00000007503	ENSMPUP00000004454	SPG7 matrix AAA peptidase subunit, paraplegin.	AFG3 like matrix AAA peptidase subunit 2.	0.830
SPG7	STOML3	ENSMPUP00000007503	ENSMPUP00000014915	SPG7 matrix AAA peptidase subunit, paraplegin.	Stomatin like 3.	0.554
STOML3	AFG3L2	ENSMPUP00000014915	ENSMPUP00000004454	Stomatin like 3.	AFG3 like matrix AAA peptidase subunit 2.	0.554
STOML3	ASIC3	ENSMPUP00000014915	ENSMPUP00000008162	Stomatin like 3.	Acid sensing ion channel subunit 3; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.	0.752
STOML3	CNGA4	ENSMPUP00000014915	ENSMPUP00000005743	Stomatin like 3.	Cyclic nucleotide gated channel subunit alpha 4.	0.700
STOML3	M3XLQ6_MUSPF	ENSMPUP00000014915	ENSMPUP00000000006	Stomatin like 3.	ATPase_AAA_core domain-containing protein.	0.554
STOML3	M3YYA4_MUSPF	ENSMPUP00000014915	ENSMPUP00000016314	Stomatin like 3.	Peptidase_M41 domain-containing protein.	0.554
STOML3	PROSER1	ENSMPUP00000014915	ENSMPUP00000014913	Stomatin like 3.	Proline and serine rich 1.	0.584
STOML3	RHBDL2	ENSMPUP00000014915	ENSMPUP00000014346	Stomatin like 3.	Rhomboid-related protein 2; Involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors; Belongs to the peptidase S54 family.	0.583