STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tchl_1028Type IV fimbrial assembly protein PilC. (409 aa)    
Predicted Functional Partners:
Tchl_1029
Type IV fimbrial assembly, ATPase PilB.
 
 0.982
Tchl_1027
Type 4 prepilin leader peptidase/N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.975
Tchl_0652
Type II secretory pathway, ATPase PulE/Tfp.
 
 0.933
Tchl_0618
Type II secretion system protein E.
 
 0.921
Tchl_2311
Type II secretion system, GspE-like protein.
 
 0.920
Tchl_0751
Type IV pilus biogenesis protein PilM.
 
 
 
 0.825
Tchl_0493
Twitching motility protein PilT.
  
 0.806
Tchl_0492
Twitching motility protein PilT.
 
   
 0.790
Tchl_2784
Twitching motility protein PilT.
 
   
 0.790
Tchl_0755
Type IV pilus biogenesis protein PilQ.
 
 
 
 0.749
Your Current Organism:
Thauera chlorobenzoica
NCBI taxonomy Id: 96773
Other names: ATCC 700723, CIP 107679, DSM 18012, KCTC 12933, T. chlorobenzoica, Thauera aromatica genomovar chlorobenzoica, Thauera chlorobenzoica Song et al. 2001, strain 3CB-1
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