STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tchl_1653Ferric siderophore transport system protein TonB. (243 aa)    
Predicted Functional Partners:
Tchl_1651
Biopolymer transport protein ExbD/TolR.
 
 
 0.968
Tchl_1652
MotA/TolQ/ExbB proton channel family protein.
 
 
 0.966
Tchl_1242
Vitamin B12 receptor BtuB.
 
 
 
 0.829
Tchl_2466
Outer membrane ligand gated channel.
 
 
 0.748
Tchl_1614
Tol biopolymer transport system, TolR protein.
  
 
 0.727
Tchl_1148
Putative outer membrane ferric siderophore receptor.
  
 
 0.710
Tchl_1157
Outer membrane receptor protein.
  
 
 0.710
Tchl_1354
Hypothetical protein.
  
 
 0.702
Tchl_3154
Biopolymer transport protein ExbD/TolR.
  
 
 0.696
Tchl_1655
Bacterioferritin-associated ferredoxin.
  
  
 0.684
Your Current Organism:
Thauera chlorobenzoica
NCBI taxonomy Id: 96773
Other names: ATCC 700723, CIP 107679, DSM 18012, KCTC 12933, T. chlorobenzoica, Thauera aromatica genomovar chlorobenzoica, Thauera chlorobenzoica Song et al. 2001, strain 3CB-1
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