STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tchl_3001Putative histidine kinase. (561 aa)    
Predicted Functional Partners:
Tchl_3000
Response regulator.
 
 
 0.925
Tchl_2954
Sensory box histidine kinase/response regulator.
 
 
0.900
Tchl_2473
Diguanylate cyclase.
 
 
0.886
Tchl_2228
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
 
 
0.870
Tchl_2544
Response regulator receiver protein.
 
 0.833
Tchl_2225
Two-component hybrid sensor and regulator.
 
   0.829
Tchl_1926
REC domain signal receiver protein.
 
 
 0.816
Tchl_2699
DNA-binding response regulator.
 
 
 0.787
Tchl_1426
Diguanylate cyclase.
 
 
0.778
Tchl_1644
DNA-binding response regulator.
 
 
 0.757
Your Current Organism:
Thauera chlorobenzoica
NCBI taxonomy Id: 96773
Other names: ATCC 700723, CIP 107679, DSM 18012, KCTC 12933, T. chlorobenzoica, Thauera aromatica genomovar chlorobenzoica, Thauera chlorobenzoica Song et al. 2001, strain 3CB-1
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